New tool: classconvergence
Last week, I finally took time to finish and upload another tool for helping
analysis of cryo-EM data. This new tool is called classconvergence
and does
the same as countparticles
, but for every iteration of a 2D
or 3D classification job from RELION instead of a single iteration. It then
plots the number of particles per class as a function of iteration number. This
is convenient to check whether a classification has converged (after which the
number of particles per class stops changing).
The tool can be installed with pip, cited with doi:10.5281/zenodo.4732050 and the code is available here.